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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_781_1055_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
781 - 1055
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCGTGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
CGTTCTCCACCC
Flanking Amino Acid:
KELQELSGVQLLHEDEPLPT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
83.8
30.5
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
24.4
-2.9
3.8
36.2
40.8
Minor BPS
43.7
-0.5
2.1
55.77
42.6

Associated Gene:

Gene:
EPHX2
Ensembl Gene ID:
ENSAPLG00000012184
Chromosome:
PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020425
21 - 4246
4226
ENSAPLT00000046177
21 - 4246
4226
ENSAPLT00000040895
144 - 4242
4099
ENSAPLT00000035205
144 - 4242
4099