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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_781_1067_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
781 - 1067
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCACGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
AGCTTCTCCACG
Flanking Amino Acid:
KELQELSGVQDEPLPTACDP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
83.8
30.5
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
49.5
-0
1.7
55.6
40.1
Minor 5ss
24.4
-2.9
3.8
36.2
40.8
Minor BPS
45.7
-0.4
2
50.14
43.9

Associated Gene:

Gene:
EPHX2
Ensembl Gene ID:
ENSAPLG00000012184
Chromosome:
PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012678
26 - 4242
4217