Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002109.1_1656_1751_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1656 - 1751

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGGCTG

5'SS Class:

major

3'SS Sequence:

GTGCCCCCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

TGCCCCCCCAAG

Flanking Amino Acid:

IENPQYFCNACVHHVQRRDI

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.2

57.7

46.6

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

53.5

0.08

49.4

34.5

Minor 5ss

37.3

-1.4

3.5

57.5

46.6

Minor BPS

36.5

-1.2

2.1

40.23

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020046

Chromosome:

PEDO01002109.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032409

89 - 4989

4901