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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002113.1_2434_2676_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2434 - 2676
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TGTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAC
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
GQPGGQPAGQLPVAADVPG*
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
47.8
-0.1
1.4
58.1
40.4
Major PPT
72.8
0.51
0.8
66.2
30
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
PDE1B
Ensembl Gene ID:
ENSAPLG00000024864
Chromosome:
PEDO01002113.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032941
96 - 7164
7069