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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002179.1_379_733_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
379 - 733
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTCCCCTTCACA
Flanking Amino Acid:
KVAKFCYADKDLINKAINAA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
69.4
0.44
0.8
63.8
30.2
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
67.1
0.53
1.8
76.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027362
Chromosome:
PEDO01002179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035403
12 - 3100
3089