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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002180.1_5314_6320_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5314 - 6320
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTGACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTGCTTTGACT
Flanking Amino Acid:
HTQITKTFKDSCPGKMLLRT
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
78.6
0.71
1
78.6
31
Major PPT
60.7
0.24
1.1
55.2
44.6
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
71.7
0.76
1.3
83.64
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020071
Chromosome:
PEDO01002180.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025808
4955 - 7111
2157