Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002185.1_1032_1742_F

Intron Information:

Intron Rank:

124311

Intron Class:

major

Intron Phase:

Intron Coordinates:

1032 - 1742

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

CCCCACCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTCCAT

U12 Branch Point Sequence:

CTTCCCCCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

54.8

44.4

Major BPS

52.4

0.06

1.3

41.7

Major PPT

64.8

0.33

0.8

57.2

26.6

Minor 5ss

22.7

-3.1

3.2

37.8

Minor BPS

45.2

-0.3

2.1

61.15

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017019

Chromosome:

PEDO01002185.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023625

21 - 3269

3249