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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002185.1_618_733_F

Intron Information:

Intron Rank:
124313
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
618 - 733
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGAACCA
5'SS Class:
weak_major
3'SS Sequence:
CCCTCCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
CAGGTTTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
50.7
40.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
67.7
0.4
0.8
62.4
26.9
Minor 5ss
26.6
-2.7
3.1
32
42
Minor BPS
47.1
-0.2
1.7
49.73
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017019
Chromosome:
PEDO01002185.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023625
21 - 3269
3249