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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002185.1_812_918_F

Intron Information:

Intron Rank:
124314
Intron Class:
major
Intron Phase:
Intron Coordinates:
812 - 918
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCGCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAC
U12 Branch Point Sequence:
TTCTCCGCCAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
68.3
0.41
0.9
62.9
33
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
40.5
-0.7
2.6
57.93
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017019
Chromosome:
PEDO01002185.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024481
21 - 3269
3249
ENSAPLT00000023625
21 - 3269
3249