Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002189.1_3161_4720_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3161 - 4720

Intron Length:

1560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TTTACTCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGAACAT

U12 Branch Point Sequence:

GTTTCCTTTACT

Flanking Amino Acid:

TRLVLRAKGISYEVININLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

55.8

0.15

1.3

63.4

42.8

Major PPT

81.7

0.71

0.8

74.1

36.5

Minor 5ss

29.9

-2.3

3.4

45.6

Minor BPS

80.5

1.04

1.5

93.5

34.2

Associated Gene:

Gene:

GSTO1

Ensembl Gene ID:

ENSAPLG00000027834

Chromosome:

PEDO01002189.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045542

2659 - 5093

2435