Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002194.1_2131_2561_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2131 - 2561

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTACGCCTG

5'SS Class:

major

3'SS Sequence:

ACCCCCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

TCTCCCTCACCC

Flanking Amino Acid:

GQGDRGSADNLYLAIALIAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.39

1.2

56.8

47.7

Major BPS

0.27

1.3

53.3

44.2

Major PPT

64.6

0.33

0.8

54.2

30.2

Minor 5ss

42.8

-0.8

3.3

60.4

44.4

Minor BPS

54.8

0.13

1.9

68.24

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016197

Chromosome:

PEDO01002194.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016912

224 - 3352

3129