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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002225.1_1982_2128_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1982 - 2128
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTTTCTGTCATT
Flanking Amino Acid:
TPHRTGLLENREKRKRAQPP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
85.6
31.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
74.8
0.56
0.9
75
34.7
Minor 5ss
39.1
-1.2
3.4
59
45.5
Minor BPS
53.6
0.19
2.4
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028856
Chromosome:
PEDO01002225.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029234
21 - 4530
4510