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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002225.1_22782_24817_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22782 - 24817
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCTT
5'SS Class:
major
3'SS Sequence:
CTGTGCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACACAACG
Flanking Amino Acid:
LKRATELSLQEFNSSLLDSV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.9
39.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
67.8
0.4
1
65.7
41
Minor 5ss
30.6
-2.2
3.6
46.7
48.6
Minor BPS
45.5
-0.4
2
55.61
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005991
Chromosome:
PEDO01002225.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006261
18155 - 27601
9447