Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002225.1_24934_26266_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24934 - 26266

Intron Length:

1333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGATCT

5'SS Class:

major

3'SS Sequence:

ACTTTATTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

AATGCCTAAAAG

Flanking Amino Acid:

EAEELKRNAETGELPHSYRL

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

0.9

72.9

Major BPS

75.1

0.62

65.6

Major PPT

80.3

0.68

0.8

78.2

34.6

Minor 5ss

41.2

-1

56.9

47.4

Minor BPS

49.3

-0.1

1.9

56.26

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005991

Chromosome:

PEDO01002225.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006261

18155 - 27601

9447