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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002228.1_11496_11866_R

Intron Information:

Intron Rank:
138550
Intron Class:
major
Intron Phase:
Intron Coordinates:
11496 - 11866
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
GGTTCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCATGGTAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
83.9
30.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.7
0.56
0.9
65.5
41
Minor 5ss
42.1
-0.9
3
57.4
40.7
Minor BPS
39.3
-0.7
2.7
59.67
49.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022020
Chromosome:
PEDO01002228.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048368
10112 - 12979
2868