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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002228.1_4157_4756_R

Intron Information:

Intron Rank:
134827
Intron Class:
major
Intron Phase:
Intron Coordinates:
4157 - 4756
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
ATCTCCTAACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
81.8
0.72
0.7
76.1
26
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
58.6
0.35
2
77.84
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019869
Chromosome:
PEDO01002228.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022567
3606 - 6595
2990