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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002228.1_5099_5370_R

Intron Information:

Intron Rank:
134828
Intron Class:
major
Intron Phase:
Intron Coordinates:
5099 - 5370
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
80.3
0.68
0.7
78.8
26.7
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
53.7
0.2
1.9
74.8
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019869
Chromosome:
PEDO01002228.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022567
3606 - 6595
2990