About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002348.1_5006_5960_R


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
5006 - 5960

Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTACAGATA

5'SS Class:
major

3'SS Sequence:
GTGGCGTTTGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AGGTGAC

U12 Branch Point Sequence:
GGTAAGGTGACG

Flanking Amino Acid:
EIRTTSDKHLRQVLSTVCQE

Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
65.7
0.37
1.1
64.9
40.6

Major BPS
48.9
-0
1.3
40.5
41.4

Major PPT
69.4
0.44
1
61.4
44.5

Minor 5ss
34.3
-1.8
3.5
45
45

Minor BPS
35.5
-1.2
2.5
41.9
42.5

Associated Gene:

Gene:
KANK4

Ensembl Gene ID:

Chromosome:
PEDO01002348.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

207 - 14256
14050

207 - 14256
14050