Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002355.1_580_675_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

580 - 675

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACGGGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTCTAT

U12 Branch Point Sequence:

AGCCCCACACCT

Flanking Amino Acid:

VAKPAGGNYSKPLLLSEDEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.1

52.6

44.7

Major BPS

48.5

-0

1.4

47.8

45.7

Major PPT

72.6

0.51

0.8

63.8

31.2

Minor 5ss

29.3

-2.4

3.7

36.9

42.1

Minor BPS

42.6

-0.4

58.25

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022777

Chromosome:

PEDO01002355.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029756

21 - 745

725