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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002400.1_1142_2245_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1142 - 2245
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
TTTGACTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGCCTTTGACT
Flanking Amino Acid:
LNPRSPYYGQVIHRLPMPNL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
66
0.36
1
58.5
42.7
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
73.8
0.83
1.2
84.49
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020972
Chromosome:
PEDO01002400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022677
21 - 5242
5222