About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002400.1_2432_2937_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2432 - 2937
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
ACACTTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
TCAGACTTACTC
Flanking Amino Acid:
SQCRAPKLCKMIEPVDVFWK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
65
0.37
1
73
31.6
Major PPT
77
0.61
0.9
73.5
36.1
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
47.3
-0.2
1.9
55.54
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020972
Chromosome:
PEDO01002400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022677
21 - 5242
5222