About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002400.1_3851_4131_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3851 - 4131
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGGAAT
U12 Branch Point Sequence:
TGCTCCTTTGCA
Flanking Amino Acid:
IYRFYKACCERDTWSVEEAI
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
45.8
-0.2
1.4
51
41.5
Major PPT
82.4
0.73
0.8
76.5
32
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
44.2
-0.4
3.6
68.04
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020972
Chromosome:
PEDO01002400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022677
21 - 5242
5222