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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002400.1_70_1028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70 - 1028
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
MAPREEVAYVT
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78
0.63
1
79.5
31.7
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020972
Chromosome:
PEDO01002400.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022677
21 - 5242
5222