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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002408.1_1416_1522_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1416 - 1522
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGACCC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAT
U12 Branch Point Sequence:
TCCCTGGCATCT
Flanking Amino Acid:
LMAPGCKPAFKLHLLPQFPP
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
62.3
36.5
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
29.5
-2.3
3
35.6
34
Minor BPS
32.1
-1.2
2.5
48.23
45

Associated Gene:

Gene:
RELT
Ensembl Gene ID:
ENSAPLG00000023650
Chromosome:
PEDO01002408.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036265
349 - 2931
2583