Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002408.1_1751_1836_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1751 - 1836

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACG

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAA

U12 Branch Point Sequence:

CCCCCCAGAAGT

Flanking Amino Acid:

PGEITILSVGRFRVSRIPEQ

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.4

40.3

Major BPS

70.6

0.51

1.1

71.6

36.4

Major PPT

77.2

0.61

0.8

70.2

30.7

Minor 5ss

34.3

-1.8

2.8

40.4

45.5

Minor BPS

42.7

-0.4

54.85

46.5

Associated Gene:

Gene:

RELT

Ensembl Gene ID:

ENSAPLG00000023650

Chromosome:

PEDO01002408.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036265

349 - 2931

2583