About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002414.1_23590_25453_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23590 - 25453
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTACTGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTC
Flanking Amino Acid:
VHYVPSILKQGRCVWINPSQ
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.5
0.49
0.9
63.1
42.7
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
54.3
0.11
1.8
68.28
37.3

Associated Gene:

Gene:
RSPH4A
Ensembl Gene ID:
ENSAPLG00000027690
Chromosome:
PEDO01002414.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017227
19888 - 28020
8133