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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002414.1_26524_27707_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26524 - 27707
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCATTT
Flanking Amino Acid:
WPGAYAFASGTKFNNIYFGW
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
45.5
-0.2
2.3
74.5
42.2

Associated Gene:

Gene:
RSPH4A
Ensembl Gene ID:
ENSAPLG00000027690
Chromosome:
PEDO01002414.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017227
19888 - 28020
8133