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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002418.1_1461_1531_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1461 - 1531
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCT|GCATGACCA
5'SS Class:
weak_major
3'SS Sequence:
TGGCCCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
GTTTTCTCCACA
Flanking Amino Acid:
GSWSLSSLVHGTQNQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.5
48.2
41.7
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
67.9
0.4
0.9
58.8
38.3
Minor 5ss
30.9
-2.2
4.1
49.8
46
Minor BPS
55.4
0.16
2
72
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026815
Chromosome:
PEDO01002418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039780
5 - 1547
1543