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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002424.1_1034_1221_R

Intron Information:

Intron Rank:
130861
Intron Class:
major
Intron Phase:
Intron Coordinates:
1034 - 1221
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGATTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
51.3
-0.1
1.5
53.53
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017642
Chromosome:
PEDO01002424.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038754
21 - 1509
1489