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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002437.1_294_477_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
294 - 477
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGGCTGTGATG
Flanking Amino Acid:
SYKLDHIVKERYPTFVDALR
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
64.1
0.32
1
57.1
38.7
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
42.6
-0.7
2.1
44.68
43

Associated Gene:

Gene:
PES1
Ensembl Gene ID:
ENSAPLG00000014852
Chromosome:
PEDO01002437.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044010
159 - 3513
3355
ENSAPLT00000026977
52 - 3493
3442
ENSAPLT00000015490
52 - 3496
3445