About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002437.1_91_183_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91 - 183
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CGGTGCTCAGCT
Flanking Amino Acid:
PIVNKFREYKIFVRKLRKAY
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
60.4
39.1
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
78.7
0.65
0.8
73.3
31.7
Minor 5ss
33
-1.9
3.3
44.7
43.3
Minor BPS
44.6
-0.3
2.2
60.77
48.4

Associated Gene:

Gene:
PES1
Ensembl Gene ID:
ENSAPLG00000014852
Chromosome:
PEDO01002437.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026977
52 - 3493
3442
ENSAPLT00000015490
52 - 3496
3445