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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002450.1_14570_14958_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14570 - 14958
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTCCTCCATT
Flanking Amino Acid:
ECTCTDVVKIEHTMATPLED
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.8
74.9
33.4
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
52.6
0.16
2
71.5
46

Associated Gene:

Gene:
METTL22
Ensembl Gene ID:
ENSAPLG00000013043
Chromosome:
PEDO01002450.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013590
9361 - 23111
13751