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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002450.1_15229_15701_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15229 - 15701
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTGAATA
Flanking Amino Acid:
GTVASRVYCTDVGDDLLAMC
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.7
0.78
0.8
76.7
37.5
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
64.6
0.46
1.3
72.42
33.4

Associated Gene:

Gene:
METTL22
Ensembl Gene ID:
ENSAPLG00000013043
Chromosome:
PEDO01002450.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013590
9361 - 23111
13751