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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002450.1_16395_17546_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16395 - 17546
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TAACCCTGTACA
Flanking Amino Acid:
LDWLKDEFCTDPEALFSWSE
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.5
41.9
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
36.2
-1.6
3.1
47.9
43
Minor BPS
51.5
0.04
1.8
64.48
41

Associated Gene:

Gene:
METTL22
Ensembl Gene ID:
ENSAPLG00000013043
Chromosome:
PEDO01002450.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013590
9361 - 23111
13751