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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002450.1_17628_18636_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17628 - 18636
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TACTCTTAAATG
Flanking Amino Acid:
DHCTVIMAADVFYDDDLTDA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.3
36.5
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
85.5
0.8
0.6
81.7
23.3
Minor 5ss
37.8
-1.4
3.1
44.4
45.6
Minor BPS
56.5
0.07
1.7
59.68
43

Associated Gene:

Gene:
METTL22
Ensembl Gene ID:
ENSAPLG00000013043
Chromosome:
PEDO01002450.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013590
9361 - 23111
13751