Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002479.1_1630_1995_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1630 - 1995

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCAC

5'SS Class:

major

3'SS Sequence:

TTTCTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTAGGAT

U12 Branch Point Sequence:

TGCTGTAGGATT

Flanking Amino Acid:

VGAPDAPGLEEVVARTSDPA

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

63.9

42.4

Major BPS

46.8

-0.2

1.6

45.5

47.5

Major PPT

93.6

0.98

0.6

92.4

17.8

Minor 5ss

29.7

-2.3

3.5

40.5

Minor BPS

40.5

-0.6

56.79

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005746

Chromosome:

PEDO01002479.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005934

1128 - 3150

2023