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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002479.1_2737_2821_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2737 - 2821
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TCCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
AGCCCCTGAGCC
Flanking Amino Acid:
PCEMCQKCRTRCPSGQVKIA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
83.5
0.75
0.7
75.7
32.8
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
48.4
-0.1
1.7
56.52
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005746
Chromosome:
PEDO01002479.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005934
1128 - 3150
2023