About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002480.1_271_395_F

Intron Information:

Intron Rank:
126359
Intron Class:
major
Intron Phase:
Intron Coordinates:
271 - 395
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
ATACCTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
58.9
0.26
1.6
67.1
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018078
Chromosome:
PEDO01002480.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025841
21 - 1111
1091
ENSAPLT00000027452
21 - 1111
1091