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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002496.1_7317_7543_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7317 - 7543
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TGCCCCCAAACC
Flanking Amino Acid:
MDCEAKRGKKGFVSPIKRLV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
69.9
0.45
1
65.6
36
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
48.1
-0.1
2
61.67
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022597
Chromosome:
PEDO01002496.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035273
4158 - 7573
3416