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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002515.1_3274_3927_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3274 - 3927
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TGTCTATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AACATATTAATG
Flanking Amino Acid:
PAEIDLLLISHFHLDHCGAL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.7
0.51
1.1
76
37.2
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
47.8
-0.3
1.6
48.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016825
Chromosome:
PEDO01002515.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024375
3141 - 5218
2078