Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002520.1_1709_3067_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1709 - 3067

Intron Length:

1359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

CCACCCCCAACC

Flanking Amino Acid:

LLLLAATRDQRLRNPKAEKA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

66.5

39.1

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

70.1

0.45

0.8

29.3

Minor 5ss

26.6

-2.7

3.1

33.5

41.9

Minor BPS

46.3

-0.3

1.9

53.97

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021288

Chromosome:

PEDO01002520.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041941

21 - 11488

11468

ENSAPLT00000037383

21 - 3801

3781