Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002532.1_1390_1614_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1390 - 1614

Intron Length:

225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTGGGTCGG

5'SS Class:

weak_major

3'SS Sequence:

GAGACCTTGGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGATGAA

U12 Branch Point Sequence:

AGAGCTTGAAGA

Flanking Amino Acid:

AEPPLSQGRWRIKLSILRCA

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.5

0.04

1.4

41.5

46.9

Major BPS

60.3

0.26

1.2

51.7

43.9

Major PPT

44.1

-0.3

1.7

42.9

42.8

Minor 5ss

27.7

-2.6

26.7

36.9

Minor BPS

45.9

-0.3

1.8

52.09

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026294

Chromosome:

PEDO01002532.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040099

95 - 4239

4145