Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002532.1_1876_2144_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1876 - 2144

Intron Length:

269

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AGG|GCATGGGGC

5'SS Class:

major

3'SS Sequence:

GACATCCATCGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATCCAT

U12 Branch Point Sequence:

CTGTACGAGACA

Flanking Amino Acid:

KTIEVTAQHRFLKLEKAEMG

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.3

65.4

40.4

Major BPS

57.2

0.18

1.3

68.1

Major PPT

46.1

-0.2

1.7

43.7

42.2

Minor 5ss

24.9

-2.9

4.2

31.5

43.1

Minor BPS

41.6

-0.6

2.4

54.57

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026294

Chromosome:

PEDO01002532.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040099

95 - 4239

4145