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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002532.1_2289_2531_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2289 - 2531
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GCAATTGGACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACAG
Flanking Amino Acid:
KYDPLDPAEEDFAEFQSKIQ
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
46.1
-0.2
1.2
37.9
43.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48
-0.2
1.9
56.8
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026294
Chromosome:
PEDO01002532.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040099
95 - 4239
4145