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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002537.1_880_2910_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
880 - 2910
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
TGCTCCCCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TCGTTCCCAACC
Flanking Amino Acid:
NLREVICTSRDGDKFWRMPE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.4
37
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
66.8
0.38
1
61.5
35.1
Minor 5ss
30
-2.3
3.5
34
41.8
Minor BPS
49.5
-0
1.9
62.73
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022413
Chromosome:
PEDO01002537.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024478
21 - 5692
5672