Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002544.1_753_859_R

Intron Information:

Intron Rank:

152916

Intron Class:

major

Intron Phase:

Intron Coordinates:

753 - 859

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTACG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

CTTTACGAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.4

40.3

Major BPS

0.62

1.4

85.7

34.9

Major PPT

78.8

0.65

0.9

73.1

37.2

Minor 5ss

29.2

-2.4

2.8

33.6

41.8

Minor BPS

48.3

-0

2.5

76.43

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029838

Chromosome:

PEDO01002544.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047610

21 - 2171

2151