Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002545.1_109_278_F

Intron Information:

Intron Rank:

127361

Intron Class:

major

Intron Phase:

Intron Coordinates:

109 - 278

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGCAGC

5'SS Class:

major

3'SS Sequence:

TCATTTGTTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CATTTGTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.4

46.6

Major BPS

100

1.24

0.5

100

Major PPT

69.8

0.45

1.1

70.4

39.1

Minor 5ss

38.8

-1.3

3.2

51.9

45.1

Minor BPS

48.6

-0.2

2.2

57.08

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018675

Chromosome:

PEDO01002545.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029300

21 - 1077

1057