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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002546.1_16732_16981_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16732 - 16981
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTTCTTTATAT
Flanking Amino Acid:
KLGQIGRSKRVVIEDDRIDD
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
30.2
-2.3
2.9
36.9
40.4
Minor BPS
63.9
0.52
1.7
80.79
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020822
Chromosome:
PEDO01002546.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026118
16223 - 17593
1371