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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002568.1_602_1205_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
602 - 1205
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
AATCCCACATCT
Flanking Amino Acid:
AAALLLLPAEGVDNVASDCC
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
84.7
0.78
0.7
79.9
25.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46
-0.2
2
67.2
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023188
Chromosome:
PEDO01002568.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022372
108 - 1272
1165