Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002584.1_1622_1716_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1622 - 1716

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TCG|GCAGGGGTA

5'SS Class:

major

3'SS Sequence:

GCGTGTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGAGAT

U12 Branch Point Sequence:

CCCTCGCTGATG

Flanking Amino Acid:

IKECKDPSIFGDNSFRLFFD

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.3

70.4

37.1

Major BPS

55.2

0.13

1.2

52.5

43.3

Major PPT

69.7

0.44

61.9

39.9

Minor 5ss

21.6

-3.3

4.4

47.6

Minor BPS

40.7

-0.8

2.3

42.18

43.7

Associated Gene:

Gene:

MCOLN1

Ensembl Gene ID:

ENSAPLG00000012338

Chromosome:

PEDO01002584.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018554

74 - 3581

3508

ENSAPLT00000031646

124 - 2486

2363